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Scientific Staff

vor 3 Monaten

Wien, Wien, Österreich Universität Wien Vollzeit
The University of Vienna (20 faculties and centres, 184 fields of study, approx members of staff, about students) seeks to fill the position as soon as possible of a

Scientific Staff (prae doc)

at Vienna Doctoral School of Ecology and Evolution

Reference number:

13905

Research project:
The role of structural variation in adaptive radiation

PI:
Ovidiu Paun

The species living on oceanic islands are often unique to them.

Many of them are the result of adaptive radiation, as a result of a single colonization event by few individuals.

These few ancestors then initiate the entire diversity of forms and functional strategies in the respective radiation.

This PhD project aims to test a recent hypothesis that extensive biological variation can be triggered as a result of activation of transposable elements (TEs).

The activity of TEs is traditionally expected to be detrimental to the host, as it can corrupt its genetic information.

However, TE movements may also produce different variants of genes and their regulators, or reshuffle the structure of chromosomes with phenotypic implications.


The research will focus on a highly diverse radiation of more than 30 species of persimmon trees (Diospyros) on New Caledonia.

This archipelago has the richest plant diversity per square kilometer in the world.

It had a complex geological history that produced a high diversity of soils which, together with sharp altitudinal and climatic variation, shapes its great variety of habitats.

The radiation of persimmons is fairly young, but currently occupies all these habitats, except for mangroves. The radiating clade is characterized by larger genome sizes and more TEs compared to non-radiating New Caledonian persimmons.

This comparative genomics project will investigate the genomic landscape of the diverse persimmon clade against species that did not diversify.

It will require in depth bioinformatics skills for multiple de novo genome assemblies and annotations, and investigating structural variants at different time scales.

The PhD work will be integrated into the Austrian Science Fund (FWF)-funded research project P35275.

There is an option for extension of this position up to a total of 3 years.

Employment details:


The announcement is made for 3 years, whereby the employment relationship is initially limited to 1.5 years and is automatically extended to a total of 3 years, unless the employer submits a declaration of non-renewal after a maximum of 12 months.

Job grading in accordance with collective bargaining agreement: -48 VwGr. B1 Grundstufe (praedoc) with relevant work experience determining the assignment to a particular salary grade.

Duration of employment: 1 year/s

Extent of Employment: 30 hours/week

Job grading in accordance with collective bargaining agreement: -48 VwGr. B1 Grundstufe (praedoc) with relevant work experience determining the assignment to a particular salary grade.

Job Description:
-
Exploring the role of structural genomic variation in the evolutionary history of New Caledonian Diospyros radiation;

  • Integrating the obtained results in a wider context, including for example demographic history and functional results available from complementary projects;
  • Depending on interest/skills, the work may include some wet lab tasks, for example extraction of highmolecular weight DNA for long read sequencing;
  • Participation in publication of results, presentations at conferences, and public outreach;
  • Cosupervision of MSc students.

Profile:

  • MSc degree in bioinformatics, systems biology, evolutionary biology, functional genetics or related;
  • Experience with genomics analyses, ideally genome assembly and annotation, or investigations of genomic structural variation;
  • Knowledge in programming for biological research, ideally in Python or R;
  • Ability to communicate scientific research in English;
  • Ability to work in an international team.
Human Resources and Gender Equality of the University of Vienna

Reference number:

**13905