Phd Position

vor 2 Wochen

Salzburg, Salzburg, Österreich Universität Salzburg Vollzeit

PhD position (bioinformatics / computational biology)***- Interpretable machine learning for digital twins of biopharmaceuticals _

The group:
The PhD student will be part of the Computational Systems Biology group at the
PI and group with a very strong track record (see Google Scholar link below). The group develops
interpretable machine learning models based on prior biological knowledge to explain relationships
in big biological data. We use this expertise and various other methods from Data Science to study
biomedical questions ranging from immunity to cancer. The focus lies on algorithms that produce
robust and reliable results, and on enabling interpretations from black-box algorithms.

The project:
The PhD student will be embedded into the
DigitherapeutX consortium. DigitherapeutX is a joint
effort of multiple Austrian research groups with
expertise in analytical chemistry, bioprocessing, omics
profiling, and computational modeling. The consortium
is collecting large datasets to study the production of
biological drugs (antibodies), including bioprocessing
parameters (pH, glucose concentration,), multi-omics
of host cells, and molecular attributes of the product
(glycosylation).
The PhD position is centered on developing computational approaches to understand the
relationships between bioprocessing, multi-omics data, and drug quality parameters using various
algorithms from molecular modeling, data science, and machine learning, specifically focused on
making black box models interpretable.

The place:
The city of Salzburg has ample natural and cultural attractions as well as fast connections
to Vienna and Munich. It is surrounded by beautiful lakes and mountains in the Salzkammergut,
with various opportunities for recreational and sports activities. The university has students,
and a highly collaborative research environment in both biomedical and computational sciences.

Qualifications:

  • M.Sc. degree in bioinformatics, biotechnology, computer science, statistics, physics, or similar
  • Excellent scientific thinking and communication
  • High level of motivation and drive
  • Programming skills (Python, R, or similar)
  • Experience with and interest in machine learning,
    statistics, and/or other quantitative sciences
  • An understanding of basic biological concepts
  • Excellent English and communication skills

Details:

  • Start date: As soon as possible
  • Fixedterm: 4 years
  • Salary and work hours according to Austrian funding regulations:
  • Place of work: Salzburg, Austria

Our offer:

  • Opportunities for selfgrowth (various courses for hard and soft skills)
  • Participation in conferences and project meetings
  • Excellent social benefits of working in Austria (holidays, health insurance,)
  • Environment that values a healthy work / life balance
Enthusiastic young scientists, who are motivated to systematically study and dissect biological
processes using cutting-edge computational approaches are encouraged to apply. Please send a
letter describing your motivation to pursue a PhD (one page), CV, and names of 2-3 reference

Deadline:
September 10th, 2023.

We look forward to hearing from you

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